Yes.
Green Beret has made 5 appearances on compilations under the brands of Ocean, Imagine and The Hit Squad.
The Great Escape and Yie Ar Kung-Fu are second with 4 appearances each, but hold on - that does not count the existence of Yie Ar Kung-Fu 128K (a compilation exclusive on Ocean's Stars On The 128K). If you count that in with Yie Ar Kung-Fu, then I guess that would be 5 appearances each, tying it with Green Beret for top place.
Quite a few games have 3 appearances
Daley Thompson's Supertest by Ocean
Double Dragon by Melbourne House
Frankie Goes To Hollywood by Ocean
Hyper Sports by Imagine
Operation Wolf by Ocean
Ping Pong by Imagine
Rambo by Ocean
However, there's a similar situation to Yie Ar Kung-Fu, in that there is a 128K-specific version (Daley Thompson's Supertest 128), so if you count that in with the others, that would be 4 appearances for that title. From what I can see, it's on the Stars On The 128K compilation but was aslo available separately.
2 appearances:
Arkanoid by Imagine
Army Moves by Dinamic
Barbarian: The Ultimate Warrior by Palace Software
Bubble Bobble by Firebird
Chase HQ by Ocean
Cobra by Ocean
Daley Thompson's Decathlon by Ocean
Dragon Ninja by Imagine
Fernando Martin Basket Master by Dinamic
Gryzor by Ocean
IK+ by System 3
Jet Set Willy by Software Projects
Knight Rider by Ocean
Mikie by Imagine
New Zealand Story, The by Ocean
Rainbow Islands by Ocean
Renegade by Imagine
Sabre Wulf by Ultimate Play The Game
Shadow Warriors by Ocean
Shao-Lin's Road by Edge, The
Short Circuit by Ocean
Street Hawk by Ocean
Target: Renegade by Imagine
WWF Wrestlemania by Ocean
And as for just 1 appearance?:
Afterburner by Activision
Altered Beast by Activision
Arkanoid - Revenge Of Doh by Imagine
Barbarian II: The Dungeon Of Drax by Palace Software
Barry McGuigan World Championship Boxing by Gamestar
Batman by Ocean
Batman: The Caped Crusader by Ocean
Batman: The Movie by Ocean
Beach-Head by US Gold
Bruce Lee by US Gold
Captain Blood by Exxos
Championship Sprint by Electric Dreams
Combat School by Ocean
Crazy Cars by Titus
Daley Thompson's Olympic Challenge by Ocean
Daley Thompson's Supertest 128 by Ocean (see earlier caveat?)
Driller by Incentive
Fighter Pilot by Digital Integration
Final Fight by US Gold
Flying Shark by Firebird
Game Over by Dinamic
GBA Championship Basketball by Gamestar
Ghostbusters by Activision
Ghostbusters II by Activision
Golden Axe by Virgin
Guerilla War by Imagine
Head Over Heels by Ocean
Highlander by Ocean
Ian Botham's Test Match by Tynesoft
Indiana Jones and the Last Crusade by US Gold
International Match Day by Ocean
Italia '90 - World Cup Soccer by Virgin Games
Ivan 'Ironman' Stewart's Super Off Road by Virgin
Jackal by Konami
Jail Break by Konami
Jonah Barrington's Squash by New Generation Software
Karnov by Electric Dreams
Knight Lore by Ultimate Play The Game
Konami's Tennis by Imagine
Kung-Fu Master by US Gold
Last Ninja 2 by System 3
Legend Of Kage by Imagine
Match Day by Ocean
Match Day II by Ocean
Match Point by Sinclair Research
Miami Vice by Ocean
Midnight Resistance by Ocean
Mutants by Ocean
N.O.M.A.D. by Ocean
Nemesis by Konami
Neverending Story, The by Ocean
Nick Faldo Plays The Open by Mind Games
Night Breed by Ocean
Operation Thunderbolt by Ocean
Phantis by Dinamic
Pit-Fighter by Domark
Platoon by Ocean
Pool by CDS Microsystems
Predator by Activision
Pro Tennis Tour by Ubi Soft
Psycho Soldier by Imagine
Rampage by Activision
Rastan by Imagine
Real Ghostbusters, The by Activision
Robocop by Ocean
R-Type by Electric Dreams
Run The Gauntlet by Ocean
Salamander by Konami
SDI - Now The Odds Are Even by Activision
Slap Fight by Imagine
Spy Hunter by US Gold
Steve Davis Snooker by CDS Microsystems
Super Bowl by Ocean
Super Hang-On by Electric Dreams
Super Soccer by Imagine
Super Sprint by Electric Dreams
Terminator 2: Judgment Day by Ocean
The Simpsons: Bart vs The Space Mutants by Ocean
Top Gun by Ocean
Total Recall by Ocean
Track And Field by Ocean
Turrican by Rainbow Arts
Typhoon by Imagine
V by Ocean
Vindicator, The by Imagine
WEC Le Mans by Imagine
Winter Olympiad '88 by Tynesoft
Wizball by Ocean
World Series Basketball by Imagine
X-Out by Rainbow Arts
Yie Ar Kung-Fu 128K by Ocean (see earlier caveat?)
Yie Ar Kung-Fu 2 by Imagine